PTM Viewer PTM Viewer

AT5G67200.1

Arabidopsis thaliana [ath]

Leucine-rich repeat protein kinase family protein

12 PTM sites : 4 PTM types

PLAZA: AT5G67200
Gene Family: HOM05D000033
Other Names: NULL

Link out to other resources with this protein ID : TAIR   |   PeptideAtlas   |   ARAPORT   |   PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs



PTM Type

Mod AA

Pos

Peptide

Exp ID

Conf
ox C 227 SNPGLCGEIINR47
sno C 227 SNPGLCGEIINR169
ng N 246 SPFFGSTNK74
ph S 326 GEASLSQQQQSQNQTPR88
114
ph S 328 GEASLSQQQQSQNQTPR100
114
ph S 333 GEASLSQQQQSQNQTPR88
114
ph T 337 GEASLSQQQQSQNQTPR88
114
ph S 348 AVPVLNSDTESQKR88
114
AVPVLNSDTESQK100
ph S 352 AVPVLNSDTESQKR88
114
ph S 371 IPNSGNLVFCGESR23
88
114
ph S 382 SQGMYTMEQLMR20
59
88
109
114
ph S 395 ASAELLGR20
23
25
59
88
114

Sequence

Length: 669

MTLNFFLPFFFFFILLRVSAGAEPNYFNSLLPSDAVALLSFKSTADLDNKLLYSLTERYDYCQWRGVKCAQGRIVRLVLSGVGLRGYFSSATLSRLDQLRVLSLENNSLFGPIPDLSHLVNLKSLFLSRNQFSGAFPPSILSLHRLMILSISHNNFSGSIPSEINALDRLTSLNLDFNRFNGTLPSLNQSFLTSFNVSGNNLTGVIPVTPTLSRFDASSFRSNPGLCGEIINRACASRSPFFGSTNKTTSSEAPLGQSAQAQNGGAVVIPPVVTKKKGKESGLVLGFTAGLASLIVLGLCLVVFSLVIKKRNDDGIYEPNPKGEASLSQQQQSQNQTPRTRAVPVLNSDTESQKREKEVQFQETEQRIPNSGNLVFCGESRSQGMYTMEQLMRASAELLGRGSVGITYKAVLDNQLIVTVKRLDAAKTAVTSEEAFENHMEIVGGLRHTNLVPIRSYFQSNGERLIIYDYHPNGSLFNLIHGSRSSRAKPLHWTSCLKIAEDVAQGLYYIHQTSSALVHGNLKSTNILLGQDFEACLTDYCLSVLTDSSSASPDDPDSSSYKAPEIRKSSRRPTSKCDVYSFGVLIFELLTGKNASRHPFMAPHDMLDWVRAMREEEEGTEDNRLGMMTETACLCRVTSPEQRPTMRQVIKMIQEIKESVMAEENDPFR

ID PTM Type Color
ox Reversible Cysteine Oxidation X
sno S-nitrosylation X
ng N-glycosylation X
ph Phosphorylation X
Multiple types X

Domains & Sites

Clear highlighted range 
Interpro Domains
Show IPR ID From To
IPR000719 393 669
Molecule Processing
Show Type From To
Signal Peptide 1 21
Sites
Show Type Position
Active Site 399
Active Site 421

BLAST


Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
A downloadable tutorial can be found here